Publications

Anne's Google Scholar Profile

Submitted. Thompson, AW, Kouba, K., and Ahlgren, NA. Niche partitioning of low-light adapted Prochlorococcus sub-ecotypes across oceanographic gradients. Limnology and Oceanography.

Submitted. Turkarslan, S, Stopnisek, N, Hardwicke, J, Thompson, AW, Stahl DA, Hilesland, KL, Baliga NS. “Interspecies interactions during laboratory evolution of the obligate syntrophic community.” Cell.

2019 Thompson, AW and Kouba, K “Differential activity of coexisting Prochlorococcus ecotypes in the open ocean”. Frontiers in Marine Science, 6: 701. doi:10.3389/fmars.2019.00701

2018 Thompson, AW, van den Engh, G, Ahlgren, NA, Kouba, K, Ward, S, Wilson, ST, & Karl, DM. (2018). Dynamics of Prochlorococcus Diversity and Photoacclimation During Short-Term Shifts in Water Column Stratification at Station ALOHA. Frontiers in Marine Science: https://www.frontiersin.org/article/10.3389/fmars.2018.00488

2017 van den Engh, G. Doggett, K, Thompson, AW, Doblin, M., Gimpel, C., Karl, D. “Dynamics of Prochlorococcus and Synechococcus at Station ALOHA revealed through high-resolution vertical sampling” Frontiers in Marine Science. https://doi.org/10.3389/fmars.2017.00359

2017 Thompson AW, Turkarslan, S, Arens, C, Garcia Lopez de Lomana, A, Raman, A, Stahl, DA, Baliga, NS. "Robustness of a microbial community emerges from population structure among single cells of a clonal population" Environmental Microbiology. doi:10.1111/1462-2920.13764

2017 Turkarslan, S, Arens, C, Thompson AW, Raman, A, Stahl, DA, Baliga, NS. "Mechanism for microbial population collapse in a fluctuating resource environment". Molecular Systems Biology 13(3): 919.

2015 Thompson AW and van den Engh, G. “A multi-laser flow cytometry method to measure single cell and population-level fluorescence action spectra for the targeted study and isolation of phytoplankton in complex assemblages.” Limnology and Oceanography Methods. Accepted 14(1): 39-49.

2015 Thompson AW, Crow MJ, Wadey B, Arens C, Turkarslan S, Stolyar S, Elliot N, Petersen TW, van den Engh G, Stahl DA, Baliga N. “A method to analyze, sort, and retain viability of obligate anaerobic microorganisms from complex microbial communities.” Journal of Microbiological Methods. 117:74-77.
        
2014 Thompson A, Carter BJ, Turk-Kubo K, Malfatti F, Azam F and Zehr JP. "Genetic diversity of the unicellular nitrogen-fixing cyanobacteria UCYN-A and its prymnesiophyte host." Environmental Microbiology 16(10): 3238–3249.

2014 Biller SJ, Schubotz F, Roggensack SE, Thompson AW, Summons RE and Chisholm SW. "Bacterial Vesicles in Marine Ecosystems." Science 343(6167): 183-186.

2014 Shilova IN, Robidart JC, Tripp JH, Turk-Kubo K, Wawrik B, Post AF, Thompson AW, et al. "A microarray for assessing transcription from pelagic marine microbial taxa." The ISME Journal 8:1476:1491.

2013 Thompson AW and Zehr JP. "Cellular interactions: lessons from the nitrogen-fixing cyanobacteria." Journal of Phycology 49(6): 1024-1035.

2013 Thompson A, Bench S, Carter B and Zehr J. "Coupling FACS and genomic methods for the characterization of uncultivated symbionts." Methods in Enzymology 531: 45-60.

2012* Thompson A, Foster R, Krupke A, Carter B, Musat N, Vaulot D, Kuypers M, and Zehr J. Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337 (6101): 1546-1550.
*Faculty of 1000 Biology, recommended article.

2012 Rodrigue S, Malmstrom R, Huang K, Kelly L, Kern S, Thompson A, Roggensack S, Henn M, Birren B and Chisholm S. Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics, metagenomics, and biogeographic analysis. The ISME Journal.

2011 Thompson AW, Huang K, Saito M, and Chisholm SW. Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability. The ISME Journal 5pages15801594.

2009 Frias-Lopez J, Thompson A, Waldbauer J, Chisholm SW. Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters. Environmental Microbiology 11(2): 512-525.

2003 Braun KM, Thompson AW, Sandgren EP. Hepatic Microenvironment Affects Oval Cell Localization in Albumin-Urokinase-Type Plasminogen Activator Transgenic Mice.  American Journal of Pathology. 162(1): 195-202.